Inferring structural variant cancer cell fraction

- Cmero, Marek, Yuan, Ke, Cao, Shaolong, Scarlett, Christopher J., Christie, Elizabeth L., Cun, Yupeng, Dawson, Kevin J., Demeulemeester, Jonas, Dentro, Stefan C., Deshwar, Amit G., Donmez, Nilgun, Drews, Ruben M., Eils, Roland, Ong, Cheng Soon, Fan, Y, Fittall, MW, Garsed, DW, Gerstung, M, Getz, G, Gonzalez, S, Ha, G, Haase, K, Imielinski, M, Jerman, L, Schröder, Jan, Ji, Y, Jolly, C, Kleinheinz, K, Lee, J, Lee-Six, H, Leshchiner, I, Livitz, D, Malikic, S, Martincorena, I, Mitchell, TJ, Adams, David J., Morris, QD, Mustonen, V, Oesper, L, Peifer, M, Peto, M, Raphael, BJ, Rosebrock, D, Rubanova, Y, Sahinalp, SC, Salcedo, A, Anur, Pavana, Schlesner, M, Schumacher, SE, Sengupta, S, Shi, R, Shin, SJ, Spellman, PT, Spiro, O, Stein, LD, Tarabichi, M, Van Loo, P, Beroukhim, Rameen, Vembu, S, Vázquez-García, I, Wang, W, Wedge, DC, Wheeler, DA, Wintersinger, JA, Yang, TP, Yao, X, Yu, K, Zhu, H, Boutros, Paul C., Corcoran, NM, Papenfuss, T, Hovens, CM, Markowetz, F, Macintyre, G, Aaltonen, LA, Abascal, F, Abeshouse, A, Aburatani, H, Adams, DJ, Bowtell, David D. L., Agrawal, N, Ahn, KS, Ahn, SM, Aikata, H, Akbani, R, Akdemir, KC, Al-Ahmadie, H, Al-Sedairy, ST, Al-Shahrour, F, Alawi, M, Campbell, Peter J., Albert, M, Aldape, K, Alexandrov, LB, Ally, A, Alsop, K, Alvarez, EG, Amary, F, Amin, SB, Aminou, B, Ammerpohl, O

Pan-cancer analysis of whole genomes

- Campbell, Peter J., Getz, Gad, Korbel, Jan O., Stuart, Joshua M., Jennings, Jennifer L., Stein, Lincoln D., Perry, Marc D., Nahal-Bose, Hardeep K., Francis Ouellette, Bose B.F., Li, Constance H., Rheinbay, Esther, Nielsen, G. Petur, Sgroi, Dennis C., Wu, Chin-Lee, Faquin, William C., Deshpande, Vikram, Boutros, Paul C., Lazar, Alexander J., Hoadley, Katherine A., Louis, David N., Scarlett, Christopher J., Dursi, L. Jonathan, Yung, CK, Bailey, MH, Saksena, G, Raine, KM, Buchhalter, I, Kleinheinz, K, Schlesner, M, Zhang, J, Wang, W, Wheeler, DA, Ding, L, Simpson, JT, O'Connor, BD, Yakneen, S, Ellrott, K, Miyoshi, N, Butler, AP, Royo, R, Shorser, SI, Vazquez, M, Rausch, T, Tiao, G, Waszak, SM, Rodriguez-Martin, B, Shringarpure, S, Wu, DY, Demidov, GM, Delaneau, O, Hayashi, S, Imoto, S, Habermann, N, Segre, AV, Garrison, E, Cafferkey, A, Alvarez, EG, Heredia-Genestar, JM, Muyas, F, Drechsel, O, Bruzos, AL, Temes, J, Zamora, J, Baez-Ortega, A, Kim, HL, Mashl, RJ, Ye, K, DiBiase, A, Huang, KL, Letunic, I, McLellan, MD, Newhouse, SJ, Shmaya, T, Kumar, S, Wedge, DC, Wright, MH, Yellapantula, VD, Gerstein, M, Khurana, E, Marques-Bonet, T, Navarro, A, Bustamante, CD, Siebert, R, Nakagawa, H, Easton, DF, Ossowski, S, Tubio, JMC, De La Vega, FM, Estivill, X, Yuen, D, Mihaiescu, GL, Omberg, L, Ferretti, V, Sabarinathan, R, Pich, O, Gonzalez-Perez, A, Taylor-Weiner, A, Fittall, MW, Demeulemeester, J, Tarabichi, M, Roberts, ND

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

- Bailey, Matthew H., Perry, MD, Puiggros, M, Raine, KM, Rheinbay, E, Royo, R, Sahinalp, SC, Saksena, G, Sarrafi, I, Schlesner, M, Simpson, JT, Stebbings, L, Stewart, C, Stobbe, MD, Teague, JW, Tiao, G, Torrents, D, Wala, JA, Wang, J, Wang, W, Waszak, SM, Weischenfeldt, J, Wendl, MC, Werner, J, Wu, Z, Xue, H, Yakneen, S, Yamaguchi, TN, Ye, K, Yellapantula, VD, Yung, CK, Zhang, J, Pedersen, JS, Puiggròs, M, Wendl, M, Ellrot, K, Wheeler, DA, Getz, G, Gerstein, MB, Ding, L, Aaltonen, LA, Abascal, F, Abeshouse, A, Aburatani, H, Adams, DJ, Agrawal, N, Ahn, KS, Ahn, S-M, Aikata, H, Akbani, R, Akdemir, KC, Al-Ahmadie, H, Al-Sedairy, ST, Al-Shahrour, F, Alawi, M, Albert, M, Aldape, K, Alexandrov, LB, Ally, A, Alsop, K, Alvarez, EG, Amary, F, Amin, SB, Aminou, B, Ammerpohl, O, Anderson, MJ, Ang, Y, Antonello, D, Anur, P, Aparicio, S, Meyerson, William U., Bailey, MH, Buchanan, A, Chiotti, K, Covington, K, Creason, A, Ellrott, K, Fan, Y, Foltz, S, Dursi, Lewis Jonathan, Hale, W, Haussler, D, Hess, JM, Hutter, CM, Kandoth, C, Kasaian, K, Kasapi, M, Larson, D, Leshchiner, I, Wang, Liang-Bo, Letaw, J, Ma, S, McLellan, MD, Men, Y, Mills, GB, Niu, B, Peto, M, Radenbaugh, A, Reynolds, SM, Dong, Guanlan, Sofia, H, Struck, AJ, Stuart, JM, Weinstein, JN, Wong, CK, Xi, L, Liang, Wen-Wei, Bieg, M, Boutros, PC, Buchhalter, I, Butler, AP, Chen, K, Chong, Z, Drechsel, O, Weerasinghe, Amila, Jonathan Dursi, L, Eils, R, Espiritu, SMG, Fulton, RS, Gao, S, Gelpi, JLL, Gonzalez, S, Li, Shantao, Gut, IG, Hach, F, Heinold, MC, Hinton, J, Hu, T, Huang, V, Huang, Y, Hutter, B, Jones, DR, Kelso, Sean, Jung, J, Jäger, N, Kim, HL, Kleinheinz, K, Kumar, S, Kumar, Y, Lalansingh, CM, Letunic, I, Livitz, D, Ma, EZ, Maruvka, YE, Mashl, RJ, Menzies, A, Milovanovic, A, Nielsen, MM, Ossowski, S, Paramasivam, N, Scarlett, Christopher J.

Sex differences in oncogenic mutational processes

- Li, Constance H., Bailey, MH, Bailey, PJ, Balasundaram, M, Balu, S, Bandopadhayay, P, Prokopec, Stephenie D., Campbell, Peter J., Scarlett, Christopher J., Chang, David K., Cooke, Sussanah L., Deshpande, Vikram, Faltas, Bishoy M., Faquin, William C., Garraway, Levi, Getz, Gad, Grimmond, Sean M., Haider, Syed, Sun, Ren X., Hoadley, KA, Jiao, W, Kaiser, VB, Karlic, R, Kato, M, Kübler, K, Lazar, AJ, Li, CH, Louis, DN, Margolin, A, Yousif, Fouad, Martin, S, Nahal-Bose, HK, Nielsen, GP, Nik-Zainal, S, Omberg, L, P¿ng, C, Perry, MD, Polak, P, Rheinbay, E, Rubin, MA, Schmitz, Nathaniel, Semple, CA, Sgroi, DC, Shibata, T, Siebert, R, Smith, J, Stein, LD, Stobbe, MD, Sun, RX, Thai, K, Wright, DW, Al-Shahrour, Fatima, Wu, CL, Yuan, K, Zhang, J, Boutros, PC, Aaltonen, LA, Abascal, F, Abeshouse, A, Aburatani, H, Adams, DJ, Agrawal, N, Atwal, Gurnit, Ahn, KS, Ahn, SM, Aikata, H, Akbani, R, Akdemir, KC, Al-Ahmadie, H, Al-Sedairy, ST, Al-Shahrour, F, Alawi, M, Albert, M, Bailey, Peter J., Aldape, K, Alexandrov, LB, Ally, A, Alsop, K, Alvarez, EG, Amary, F, Amin, SB, Aminou, B, Ammerpohl, O, Anderson, MJ, Biankin, Andrew V., Ang, Y, Antonello, D, Anur, P, Aparicio, S, Appelbaum, EL, Arai, Y, Aretz, A, Arihiro, K, Ariizumi, SI, Armenia, J, Boutros, Paul C., Arnould, L, Asa, S, Assenov, Y, Atwal, G, Aukema, S, Auman, JT, Aure, MR, Awadalla, P, Aymerich, M, Bader, GD